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MaizeGDB becomes ‘sequence-centric’

机译:MaizeGDB成为“以序列为中心”

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摘要

MaizeGDB is the maize research community’s central repository for genetic and genomic information about the crop plant and research model Zea mays ssp. mays. The MaizeGDB team endeavors to meet research needs as they evolve based on researcher feedback and guidance. Recent work has focused on better integrating existing data with sequence information as it becomes available for the B73, Mo17 and Palomero Toluqueño genomes. Major endeavors along these lines include the implementation of a genome browser to graphically represent genome sequences; implementation of POPcorn, a portal ancillary to MaizeGDB that offers access to independent maize projects and will allow BLAST similarity searches of participating projects’ data sets from a single point; and a joint MaizeGDB/PlantGDB project to involve the maize community in genome annotation. In addition to summarizing recent achievements and future plans, this article also discusses specific examples of community involvement in setting priorities and design aspects of MaizeGDB, which should be of interest to other database and resource providers seeking to better engage their users. MaizeGDB is accessible online at http://www.maizegdb.org.
机译:MaizeGDB是玉米研究社区的中央仓库,用于存储有关农作物和Zea mays ssp研究模型的遗传和基因组信息。可能。 MaizeGDB团队根据研究人员的反馈和指导努力满足研究需求。最近的工作集中在更好地整合现有数据和序列信息,因为它可用于B73,Mo17和PalomeroToluqueño基因组。这些方面的主要努力包括实现基因组浏览器以图形方式表示基因组序列。实施POPcorn,这是MaizeGDB的辅助门户,可访问独立的玉米项目,并将允许从单个点对参与项目的数据集进行BLAST相似性搜索; MaizeGDB / PlantGDB联合项目,使玉米社区参与基因组注释。除了总结最近的成就和未来计划之外,本文还讨论了社区参与设置MaizeGDB的优先级和设计方面的具体示例,这对于寻求更好地与用户互动的其他数据库和资源提供者来说应该是有意义的。可通过http://www.maizegdb.org在线访问MaizeGDB。

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